Browse of TCMCG065C13490 protein

CDS

Accession Number	TCMCG065C13490
gbkey	CDS
Protein Id	XP_004964812.1
Location	join(5350007..5350030,5350623..5350696,5350813..5350952,5351068..5351154,5351252..5351339,5351435..5351518,5351977..5352054,5352149..5352228,5353065..5353143,5353432..5353740,5353822..5353908,5354854..5355085,5356188..5356394,5357134..5358438,5358540..5358792,5358900..5358984,5359062..5359149,5359456..5359534,5359974..5360272,5361841..5362867,5362950..5363327,5363563..5364200)
Gene	LOC101772542
GeneID	101772542
Organism	Setaria italica

Protein

Length	1906aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA207554
db_source	XM_004964755.4
Definition	mediator of RNA polymerase II transcription subunit 13 [Setaria italica]

EGGNOG-MAPPER Annotation

COG_category	I
Description	Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K15164        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko04919        [VIEW IN KEGG] map04919        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0005215        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0006810        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008643        [VIEW IN EMBL-EBI] GO:0015144        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016021        [VIEW IN EMBL-EBI] GO:0022857        [VIEW IN EMBL-EBI] GO:0031224        [VIEW IN EMBL-EBI] GO:0034219        [VIEW IN EMBL-EBI] GO:0040034        [VIEW IN EMBL-EBI] GO:0044425        [VIEW IN EMBL-EBI] GO:0050789        [VIEW IN EMBL-EBI] GO:0050793        [VIEW IN EMBL-EBI] GO:0051119        [VIEW IN EMBL-EBI] GO:0051179        [VIEW IN EMBL-EBI] GO:0051234        [VIEW IN EMBL-EBI] GO:0051239        [VIEW IN EMBL-EBI] GO:0055085        [VIEW IN EMBL-EBI] GO:0065007        [VIEW IN EMBL-EBI] GO:0071702        [VIEW IN EMBL-EBI] GO:0090213        [VIEW IN EMBL-EBI] GO:2000026        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGTGGACCAACATTTTCAAAATAGTGGACCTCCAAACAGTTTCATGGTTTCAGTTTCTTCCTATTGAACCAGATGCAAGTACAACTAAAGAGAGAAGTTCAAAGGCTGAGCAGAAAGATGCTCTTAATAACGTTGTGCTGTCGGCATATCTTCACTTACAAAGTGAAGGTTTCCTAAGTACCTGGACAAATTCCTTTGTTGGTCCATGGGATCCATCTCAAGGAGAGCATAACCCTGATGAGAAGATCAAGCTCTGGTTGTTTCTTCCTGGCCGCCACTCATCGGTATCTGAAATGGCCCAAACTGCTGTAAACAAATTAAGAGTTGCTTCAAATGGTTTATGGGTAGCCCCAGGCAACTCAGAAGAGGTAGCAGCTGCACTGTCTCAGGCCTTAAGAAATTCTTTAGAAAGATCACTAAGAGGGCTTTCGTATGCAAGGTTTGGTGATGTTTTTACAAAATACAACCCCCCTACAAGAAATCAAAACAGCTTTAGGCGAGCACAGCCTACAGTGGAGTTTGTCTTTGCTGCCACCGAGGAAGCAATATTTGTGCACGTTCTCATATCTGCTAGGTACATGCGGAACCTTTGTAGTGATGACATAGAGAAAGTTCTCACGCATTCTCCTCGCTCTGTTGGTGAAGGTCTTCCAGTTGTTGTTGCTCCTAGTGGAATGCTTGGTAGGCTTGTCGGCTGTTGTCCAAGTGATCTTGTCAGACAAGTATATCCAAGCAAGTCCTCGGCACCTAATTTGCCAGGTTTTACTCAACCTACTGTATGTCAGCTGAGAGGCCAAAGTTACTACGTTGAAGTTGCACTTGGCTTCCCTGCTGCTTCAGCTGACAGAGTTTCTGAATCAGAACAGATTCAAATAAAAAAGGAAATGGATTCAGTGAAGGACTCTCAGCTGGGTGCTGACGGACAGCGAAAGGTAGAATCACCTGATAGCCTTCCAGTTCTTGAGAGGACATTTATTTACCCACCTGAGGCTGTTTTGGTACCTATGGTCCATCAAGCATTTGTTCGTTTTTCTAGCAAAAGAATGTGTTTACAGGGCTCTCTGGGAGGTTCATTATGGGAGGCATGGCCATTCTGGAATTTTACTCCATCTTCTTACTTTCAGAACAGCTCATTCCTGGGATCTTCTCGTGGACTTGGAGTGAATTCTAATTTTCTGAGACTAAGAAGAAAAAAGAACAAGTGCAACAACATGGCTAGTAGTGTTAGTAGTGTGAGTAGCACTTCTGATGGAAGTGAGCATGCAGTTGCTACTGAAGGCGATCTTTTAGCTGATGCTGACTCTATGGTACGCCGTCAGTCCGATACGCCTTCCAACAATGAGAATGCTGGCAGCAAGACGGTATCTAAGCGGCCCCGCTCTGAAATAACCGAAGTTTCTTCTCATGCTGGCAAAGATGTTAGTGAAAACGTACAAGGTGCAAATGGTCAAGTCGGACGCCCTTGGGGCTGGGATGATGAGGGTGTTGTGATGGACATCAATATACTGCTCTCAGAATTTGGAGATTTTAGTGACTTCTTTCAAGAAGAGGAGTTAGATTTTGGTGAGCCTCCAGGTACTGCTGAATCACACGCTCTCGTAATTCCTGCTTCCGACTGTGGAGATGTCACATTCACAGATAGTCCGTCCACAGCAATGGATATCCCTGAACAAAGACTTTCTCCTGTTGGTTTCACATCTTTGGATGCATTTGACCAACAAATTATGGCCCCTGCTCAGGATGCCGTTTCTAAAGTTCAAGAACCTCAGAAAGATGTTGCAACTCCTGCACAATCCCAGTCTTTAGTTTTATCGTCTGGAAGATTTGACTATCTTACCAAAGCTGAAGCAATGCTCACATTCGCTCCAGAATATGCAGCTGTTGAAGTTTCTGTTGCTGAGGTGCCAGCATCATTGTTCACAAATCCGTACTTGCCCAGATCAAAGAAACCAGGCAGTTCTAGTTTTAGCTCAAGAGTTTATTCATATGATGTTACACAAAGTTCTCAAATCGAGTCTGCAGGAGATAAGCCTGAGAAGCCTTCTAAATCTGGTAATCCTTTACGTGATGTTGATTCATCAAACTTATACACACTTGTCCAAGGTGGGAAGAAAGAGAGTGACAAGAGCTTAAACAGTACCGACATACAGCCAACTAAGGGAGGAACATCACCACCTATTTCTGGTGTGACTTCATTTAGTTCTTCTCTTGTTTCACAAAAGAAGAGTGATAGCATGTTTAATGCTGGGTATTTTTTGCTATCTATGAAGACTGCTCTTGCAACTGAAATTGAATGCATCACATTCCAGGCTGCCATGTGCAGAATTAGGCATACCCTGTTGTCTTTGAGACGCAAAGCGTCTGCTGATTTTAATGGCGCCATGTCCAGTTTTATGCAGACAGATGTCAGCAATAAATCAGATCTCACCCCCAAGTATGACATAAGAAAAAAAGAAGTTATGCCCATAAGGCTATCTAGTGATGTTGAGCATGAAACACATGACAGATCCTTAATGGAAAGTGTGGGAGTTTGGAGGCCGGTTGTTACTCCTAAAGGGGCAAACTCTCTTGAGTCTTTGTCTGCTAAAACATTAACTGGTGCAAGCCCAAGTCAGTCTATGCAAAGGCAGCCTGTTGTGGATCTTCTCTTTGCCATGGCGCTGCTTGTTCAACAATCTACTTCATTTGTTGATATTTCACTTGATATGGATGATGGGGATGGTTCCTTTTTCTGGCTTTCTCTGGATGAGCAAAAGAGACGTGGGTTTTCTTGTGATCCTTCGATGGTTCATGCTGGCTGTGGTGGTCTATTAGGAACATGCCATTCGAAGGATTGTGCTGGTGTTGATTTAGTTGATCCACTTTATGCTGAGGTTTCAGAGTCATCCATGTTTAGCTTGTTGCAGTCAGATATAAGGACAGCTCTCAAAACTGCCTTTGCAAACATGGATGGCCCATTATCTGTGATTGATTGGTGCAGGGGCCGAAGCAATCCACCTGAGTCTGCAGCTACGGGAGATGCATACTCTTTTCAGTACTCCACCGGTGATATCCGGGAGCCATCAAACACTTTGTCCATTGGTGGAGATTCAATGAGCCCACCTCAGCCGACCAGTAGTAACCGAGGCACTTCAGAGCTGGAGCATCAAAAGGGATATCACCGTGTCAGACCAACCATCGCCGTCCTCCCTTCACCTTCTATGCTTGTTGGTTACCAGGATGATTGGTTGAAAGTCTCGGTGAATAGCCTTAAGACTTGGGAGAAAGCTCCTTTTGAACCTTATGCCTCACCCAAGCCTGTTACTTATTATGCACTTTGCCCCGATATTGATATGCTTACTTCAGCGGCCACTGATTTTTTCTTGCAGCTTGGAACAGTTTATGAAGTTTGCAAACTGGGAACTCATTCACCACAAAACAGTGGAGGACAAATGGAACTGTCTCCTGGAAAATATTTGCCTTCAGGACTTGTTCTAGTTGAGTGTCCTGATCAGGTGAAGAAGGTTGGCAGCAGTCACTTAAGTCCCATCAGTTCGATATCTGACTATCTTCAAGCTTTTTCAAAACATTGGAGTGTGAAAAGCTTTCTAACATCTGTGTCGAGGATACTTAGGGATATAAAGCTCACTTCAAGCATCTCTACAAATCAAAAAGAGAGCAGTAGTGGACCTTGCACTGTAATTTATGTAGTCTGCCCGTTTCCAGATCCTGGTGCAATTCTACAGACACTAGTAGAATGTTCTGTTTCTCTTGGATACGTTATTTCATCCCCAGAGAGGGAAAGGAAATCACTGTATTTCCAGGTTGCCAAAGCACAAAACAGCAGTGCTTGTGCAGATGAAGCATCAGCATCAAATGTTGTAATGCTATCTGGGTTCAGTATACCTAAGCTCGTATTGCAGATTGTTACGATTGAAACTGTACTGAGAATTGATAAGCCAAGCAATGAGCTTGCTGTTTTGAAGGATATAGCATTTACAGTGTACAACAAGGCGCGGCGAATCCCACGAGCTGTTTCCACAAACGACATGTTTCAGTCACCTACTTATTTGGGTAGATCTCAGTCCACAATGATGCATGTTACATCGCCTGCTCCTACCCTTTGGAAAGAATGTTTAGTTCCTCGGATGTCTGGACCAACTCTCTCGAGAGAAACAGATTTTGATGCACCCATGAGGTCAGCAACATGGGATAACTCATGGCAGCCTGCTCGTGCAGGACTGCTGGACCCAAGTAAGATCCCGGATTTATGTGCACAAGATGATAGGAAGTATGCCTTTGAGCCACTTTTCATACTAGCAGACCCTGGATCTGTCGATCCTAATGCTTCAATGGAATCGTCAAAATCTGGAGCCGACGCCAGTGGCAGCGGGGTTTATGCCTCTGATAGTGGTGCGAGCCCTCTACTCGATGGATCTGAGTGTGACAGAGCAGCAAGTCTCCATTGCTGTTATGGTTGGACTGAGGACTGGCGATGGTTAATATGCATCTGGACAGATGCTAGAGGAGAGTTATTGGATAGCCTAATATTTCCTTTTGGTGGTATTAGTAGCCGCCAAGACACTAAAGTTCTCCAAAGTCTTTTCATTCAAATTCTGCAGCAGGGTTGTCAAATAATGTCGTCATCTCCTGAGGCTAGCAACATGAGACCAAGAGATGTAATGATAACTCGCATTGGAGGTTTTCTTGAACTTGAAATTCAAGAATGGCAAAAGGCAATATATTCTTTTGGTGGTAATGAAGTCAAGAAGTGGCCTGTGCAGTTACGGCGATCCATACCTGAGGGTATTCCATCTAATTCGAATGGTCCTGCACTCCAGCAGCAAGACATGACCTTAATTCAAGATAGAAACATGCCTTCCTCACCAAATCCTTTGTACAGTCCTCATTCAAAATCAAGTTTCATGAAAGGTGGACTTGGACAATCAGGCAACAAAAAACAGATCCTAGTGGAACAAACTGGGATGGACAATTCAAGGGGTTCGCTGCACTTAGTTCGCAGCATCAGTTTGGTTGCAGTTTCCCAAGATCATTCATTGCATCTCACATGTCAAGCGGATCTTTTGACCAGGCTTGCTCCTGGTGAAGGGAATCAAGGTAGCAGTGGTCCTTTGAGTTACTTGGAAGGCTTCACTCCAGTGAAGTCCATTGGGTCAATGCCAGCATCACACTCTTATCTCCTAGTTCCTTCTCCAAGTATGAGATACCTTTCTCCAGCAACATTACAGCTCCCGACATGCCTGACATCAGAATCTCCACCCCTTGCCCATCTACTGCACAGCAAAGGGACCGCAATTCCCTTGGCAATGGGCTATGTCGTCTCCAAAGCCGTCCCGCCCGTAAGAAGGGACTCTGCACAGCTTACCAGGGAGGATCGGCCCTCTGTTCTCTCGGTTAGCATCATTGATCACTATGGGGGCAGCATTGGCATGGTTCAAGAAAAGATGAGCCGAGGTGCTGGTGGCAGCAACATGAGCAAACAGGCAAGGAACTTCACTCAGGAGACATCGACTAGAGACTATGAGATGGAGATGCATAGTGTGCTGGAAACCGTTGCCGCCGAGCTTCACTCCCTTTCTTGGTTGACTGTTAGCCCGGTCTACACAGAAAGGCGTACGGCTCTGCCCTTCCACTGTGACATGGTCCTGAGGTTGAGGCGGCTTCTACACTACGCCGATCGGCATCTAACTCAACCAGCAGAGAAGGGAGAGACGGCTTAG

Protein:   MWTNIFKIVDLQTVSWFQFLPIEPDASTTKERSSKAEQKDALNNVVLSAYLHLQSEGFLSTWTNSFVGPWDPSQGEHNPDEKIKLWLFLPGRHSSVSEMAQTAVNKLRVASNGLWVAPGNSEEVAAALSQALRNSLERSLRGLSYARFGDVFTKYNPPTRNQNSFRRAQPTVEFVFAATEEAIFVHVLISARYMRNLCSDDIEKVLTHSPRSVGEGLPVVVAPSGMLGRLVGCCPSDLVRQVYPSKSSAPNLPGFTQPTVCQLRGQSYYVEVALGFPAASADRVSESEQIQIKKEMDSVKDSQLGADGQRKVESPDSLPVLERTFIYPPEAVLVPMVHQAFVRFSSKRMCLQGSLGGSLWEAWPFWNFTPSSYFQNSSFLGSSRGLGVNSNFLRLRRKKNKCNNMASSVSSVSSTSDGSEHAVATEGDLLADADSMVRRQSDTPSNNENAGSKTVSKRPRSEITEVSSHAGKDVSENVQGANGQVGRPWGWDDEGVVMDINILLSEFGDFSDFFQEEELDFGEPPGTAESHALVIPASDCGDVTFTDSPSTAMDIPEQRLSPVGFTSLDAFDQQIMAPAQDAVSKVQEPQKDVATPAQSQSLVLSSGRFDYLTKAEAMLTFAPEYAAVEVSVAEVPASLFTNPYLPRSKKPGSSSFSSRVYSYDVTQSSQIESAGDKPEKPSKSGNPLRDVDSSNLYTLVQGGKKESDKSLNSTDIQPTKGGTSPPISGVTSFSSSLVSQKKSDSMFNAGYFLLSMKTALATEIECITFQAAMCRIRHTLLSLRRKASADFNGAMSSFMQTDVSNKSDLTPKYDIRKKEVMPIRLSSDVEHETHDRSLMESVGVWRPVVTPKGANSLESLSAKTLTGASPSQSMQRQPVVDLLFAMALLVQQSTSFVDISLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLYAEVSESSMFSLLQSDIRTALKTAFANMDGPLSVIDWCRGRSNPPESAATGDAYSFQYSTGDIREPSNTLSIGGDSMSPPQPTSSNRGTSELEHQKGYHRVRPTIAVLPSPSMLVGYQDDWLKVSVNSLKTWEKAPFEPYASPKPVTYYALCPDIDMLTSAATDFFLQLGTVYEVCKLGTHSPQNSGGQMELSPGKYLPSGLVLVECPDQVKKVGSSHLSPISSISDYLQAFSKHWSVKSFLTSVSRILRDIKLTSSISTNQKESSSGPCTVIYVVCPFPDPGAILQTLVECSVSLGYVISSPERERKSLYFQVAKAQNSSACADEASASNVVMLSGFSIPKLVLQIVTIETVLRIDKPSNELAVLKDIAFTVYNKARRIPRAVSTNDMFQSPTYLGRSQSTMMHVTSPAPTLWKECLVPRMSGPTLSRETDFDAPMRSATWDNSWQPARAGLLDPSKIPDLCAQDDRKYAFEPLFILADPGSVDPNASMESSKSGADASGSGVYASDSGASPLLDGSECDRAASLHCCYGWTEDWRWLICIWTDARGELLDSLIFPFGGISSRQDTKVLQSLFIQILQQGCQIMSSSPEASNMRPRDVMITRIGGFLELEIQEWQKAIYSFGGNEVKKWPVQLRRSIPEGIPSNSNGPALQQQDMTLIQDRNMPSSPNPLYSPHSKSSFMKGGLGQSGNKKQILVEQTGMDNSRGSLHLVRSISLVAVSQDHSLHLTCQADLLTRLAPGEGNQGSSGPLSYLEGFTPVKSIGSMPASHSYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTAIPLAMGYVVSKAVPPVRRDSAQLTREDRPSVLSVSIIDHYGGSIGMVQEKMSRGAGGSNMSKQARNFTQETSTRDYEMEMHSVLETVAAELHSLSWLTVSPVYTERRTALPFHCDMVLRLRRLLHYADRHLTQPAEKGETA